The Training web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise. http://wiki.sagrid.ac.za/bin/view/Training Copyright 2012 by contributing authors 2011-09-27T12:30:17Z http://wiki.sagrid.ac.za/bin/view/Training/EpikhCatania2011 2011-09-27T12:30:17Z

Epikh Catania 2011 This is the working page and notebook of the South African exchange to Catania for the EPIKH. Work Programme Timothy Carr 6 September 2011 ... (last changed by TimothyCarr)

TimothyCarr http://wiki.sagrid.ac.za/bin/view/Training/AutoDevNotesAfrica5 2011-09-27T08:08:33Z

Notes on Auto Application Scientific Contact James Lee Thorp, University of Cape Town (obsjames at gmail.com) Comment from user : We are using AUTO (numerical continuation ... (last changed by TimothyCarr)

TimothyCarr http://wiki.sagrid.ac.za/bin/view/Training/AbyssDevNotesAfrica5 2011-09-27T07:41:58Z

Abyss Notes Scientific Contact : Charles Hefer and Fourie Jouebert charles.hefer at gmail.com University of Pretoria, Bioinformatics User Comments : "Abyss: A OpenMPI ... (last changed by TimothyCarr)

TimothyCarr http://wiki.sagrid.ac.za/bin/view/Training/RepoCleanupAfrica5 2011-09-27T07:36:00Z

Site Readiness Status During the EPIKH School, we will verify the site readiness status. Sites can be in a couple of states : R ready G glexec errors ... (last changed by TimothyCarr)

TimothyCarr http://wiki.sagrid.ac.za/bin/view/Training/OpenFoamDevNotesAfrica5 2011-09-26T07:56:44Z

Scientific Contact Timothy Carr / Bruce Becker System level dependencies GCC 4.4 is required and is not available on the system. User space compile of GCC is required ... (last changed by TimothyCarr)

TimothyCarr http://wiki.sagrid.ac.za/bin/view/Training/WebHome 2011-09-05T07:49:52Z

Date Type Venue Organised By Comments June Site Admin INFN, Catania GILDA First site admin training. NWU, UFS, UCT­CERN, iThemba, C4 present ... (last changed by TimothyCarr)

TimothyCarr http://wiki.sagrid.ac.za/bin/view/Training/GateDevNotesAfrica5 2011-07-28T13:02:02Z

Gate 5 6 Physics package Scientific contact Sean Murray (Gate 6) iTemba Labs murray at tlabs.ac.za Pieter du Toit (Gate 5) UFS dutoitpd at nuke.co.za System ... (last changed by SeanMurray)

SeanMurray http://wiki.sagrid.ac.za/bin/view/Training/SoapDenovoDevNotesAfrica5 2011-07-27T09:05:27Z

SOAP denovo porting notes Scientific Contact University of South Africa BruceBecker 26 Jul 2011 (last changed by BruceBecker)

BruceBecker http://wiki.sagrid.ac.za/bin/view/Training/MpiBlastDevNotesAfrica5 2011-07-26T13:52:46Z

MPI BLAST development notes Scientific Contact Inus Scheepers inus.scheepers at capebiotech.co.za Cape Biotech User Comments : "mpiBlast PIO Parallel Blast for ... (last changed by BruceBecker)

BruceBecker http://wiki.sagrid.ac.za/bin/view/Training/AutoDockVinaDevNotesAfrica5 2011-07-21T23:03:52Z

http://vina.scripps.edu/ System level dependencies boost,boost devel Devel notes looks like the boost libraries that are distributed with the SL are too old this ... (last changed by BruceBecker)

BruceBecker http://wiki.sagrid.ac.za/bin/view/Training/MrBayesDevNotesAfrica5 2011-07-21T14:16:27Z

Mr Bayes Application Description MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the ... (last changed by BruceBecker)

BruceBecker http://wiki.sagrid.ac.za/bin/view/Training/GeneticsApplicationsDevNotesAfrica5 2011-07-19T10:33:22Z

Scientific Contact These applications are used widely throughout the bioinformatics community. Contacts for now are Nicky Mulder (UCT), Scott Hazelhurst (Wits) and ... (last changed by BruceBecker)

BruceBecker http://wiki.sagrid.ac.za/bin/view/Training/SageMathDevNotesAfrica5 2011-06-09T12:39:25Z

Sage Math Development Notes Scientific Contact AIMS ftp://ftp.sun.ac.za/pub/mirrors/www.sagemath.org/src/index.html System Level Dependencies See ftp://ftp.sun ... (last changed by BruceBecker)

BruceBecker http://wiki.sagrid.ac.za/bin/view/Training/NsDevNotesAfrica5 2011-06-09T10:36:11Z

Network Simulator The Network Simulator code is described at : http://www.isi.edu/nsnam/ns/ Notes on configuring NS 3 System Level Dependencies: gccxml (http ... (last changed by BruceBecker)

BruceBecker http://wiki.sagrid.ac.za/bin/view/Training/GaussianDevNotesAfrica5 2011-06-08T09:14:36Z

Gaussian G03 Scientific contact Gideon Steyl University of the Free State steylg at ufs.ac.za Dependencies TCP Linda For "MPI" execution over multiple nodes ... (last changed by VanEckA)

VanEckA http://wiki.sagrid.ac.za/bin/view/Training/FreeFemDevNotesAfrica5 2011-06-06T14:50:16Z

Scientific Contact : Wenddabo Olivier SAWADOGODoctorant en Mathématiques appliquéesUniversité de Ouagadougou Burkina Faso wenddabo81 at gmail.com Application Description ... (last changed by BruceBecker)

BruceBecker